Visualize locally
Inspect an exported result in this browser. The selected file is never uploaded or saved by this viewer.
The sample result is fetched as a public static file and parsed by the same local viewer.
.isnb file here or press Enter to browse
Parsing, integrity checks, and result exploration stay in browser memory. No cookies or browser storage are used.
Preparing the local archive reader…
Local result
Verified RNA has no more than the selected number of mismatches for every base interpretation.
Possible RNA contains ambiguous bases such as N, R, or Y, so its mismatch range crosses the selected threshold.
BLAST shortlists likely matches, then Northern compares each shortlisted RNA base by base with the probe target. RNA not shortlisted by BLAST is reported separately and is not included among Verified matches.
| Sample ? | Validation ? | Source records ? | Unique RNA after count filter ? | Total reads after count filter ? | Retained length range ? | RNA with ambiguous bases ? | BLAST candidates ? |
|---|
Display clipping detected
The view is cumulative: moving right includes RNA whose maximum compatible mismatch count is within the selected threshold.
Every Verified RNA contributes to bands once.
| Sample ? | Unique RNA after count filter ? | RNA with ambiguous bases ? | BLAST candidates ? | Verified RNA ? | Possible RNA ? | Rejected candidates ? | Not shortlisted ? | Short RNA ? | Verified CPM ? |
|---|
This computed preview uses RNA lengths and relative CPM. It may not resemble a laboratory gel and should be confirmed experimentally.
Choose the source-profile intensity that reaches the display cap. Select or enter a whole number from 10 to 10,000 CPM; the slider scale is logarithmic.
Enter a whole number from 10 to 10,000 CPM.
Custom display override. Pixel brightness is no longer fixed-comparable with other analyses.
No verified bands at this threshold.
| Length (nt) ? |
|---|
No RNA is verified at this threshold.
| Sample ? | RNA sequence ? | Length (nt) ? | Alignment ? | Raw count ? | CPM ? |
|---|
Ambiguous bases allow both matching and mismatching interpretations at this threshold. Possible RNA never contributes to bands or Verified CPM.
No ambiguous RNA is possible at this threshold.
| Sample ? | RNA sequence ? | Length (nt) ? | Alignment ? | Raw count ? | CPM ? |
|---|
lower..upper expresses uncertainty in the RNA sequence, not a range of slider settings.